Educational open source kit for the evaluation of acoustic leaky wave antennas with metamaterials.

There is a growing interest in the field of acoustic metamaterials. These materials use periodic structures to exhibit properties not usually found in nature, such as negative mass or negative compressibility. The physics supporting these devices might seem counterintuitive at first, necessitating additional educational resources in this area. A leaky wave antenna (LWA) is a good example of a practical device that can be implemented as a standard material and a metamaterial. As the latter, the device extends its operational range, linking concepts related to both versions. This work presents an experimental open source kit designed for teaching the basic notions, including a computational routine for testing its analytical performance. The kit shown in this work has interchangeable units to experiment with several configurations (slit, axisymmetric, periodic hole, and membrane based metamaterial) and parameters of the antenna's design. The kit provides an opportunity to get hands-on experience on the real-life performance of LWAs, thanks to the use of low-cost materials, minimal equipment, and the practical nature of the antenna.

Seasonal and diel influences on bottlenose dolphin acoustic detection determined by whistles in a coastal lagoon in the southwestern Gulf of California.

Marine mammals in subtropical coastal habitats are sentinels of the health of the ecosystem and offer important ecosystem services. They rely on prey that pursues feeding opportunities, while both avoid unfavorable conditions. In many cases, these predator-prey dynamics fluctuate seasonally and are regulated by lunar, tidal, and/or diel cycles (hour). However, these rhythmical patterns may vary under different seasonal conditions. Bottlenose dolphins (Tursiops truncatus) in the Ensenada de La Paz in Baja California Sur, Mexico, were detected acoustically over the course of an annual cycle on 21 separate occasions, covering 640 h from June 2017 to May 2019. The presence of bottlenose dolphins was examined using Generalized Additive Models (GAM) including variables that are related directly to their habitat (direct variables: hour, distance, depth) and to their prey (indirect variables: SST, moon phase and tides). Seasonal differences in the presence of bottlenose dolphins were influenced more by indirect variables (explained deviance: 34.8% vs. 37.7%). Hourly acoustic detections occurred less frequently when SST exceeded 27.4 °C (Aug-End of Nov.) and more frequently at moderate temperatures (22.7 °C to 26.3 °C) in May through July. Moreover, bottlenose dolphins were detected more frequently during waning and new moon phases, at the onset of flood and ebb tides, and during day (04:00 to 20:00). The seasonal differences in acoustic detections rates were highlighted by the global GAM and hierarchical clustering. The strong seasonal pattern indicated possible interactions with rhythmic pattern of bottlenose dolphins. Four candidate variables (SST, moon, tide, and hour) were tested for plausible interaction terms additional to their individual consideration, out of which only hour changed significantly between seasons. The patterns of presence likely increase feeding opportunities or may favor other behaviors such as socializing, resting, or nursing. These might prove responsible for the distinct occurrence and hourly patterns of bottlenose dolphins.

Reduction of roadway noise in a coastal city underwater soundscape during COVID-19 confinement.

Confinement due to the COVID-19 pandemic drastically reduced human activities. Underwater soundscape variations are discussed in this study, comparing a typical and confinement day in a coastal lagoon near a popular tourist city in Mexico. Recording devices were located at 2 m in depth and 430 m away from the main promenade-a two-way avenue for light vehicle traffic-where main tourist infrastructure is located. The nearby marine environment is habitat to birds and dolphins as well as fish and invertebrates of commercial importance. Medium and small boats usually transit the area. The main underwater sound level reduction was measured at low frequencies (10-2000 Hz) because of the decrease in roadway noise. Vessel traffic also decreased by almost three quarters, although the level reduction due to this source was less noticeable. As typical day levels in the roadway noise band can potentially mask fish sounds and affect other low frequency noise-sensitive marine taxa, this study suggests that comprehensive noise analysis in coastal marine environments should consider the contribution from nearby land sources.

Microarray-Based Quality Assessment as a Supporting Criterion for de novo Transcriptome Assembly Selection.

RNA-Sequencing and de novo assembly have enabled the analysis of species with non-available reference transcriptomes, although intrinsic features (biological and technical) induce errors in the reconstruction. A strategy to resolve these errors consists of varying assembling process parameters to generate multiple reconstructions. However, the best assembly selection remains a challenge. Quantitative metrics for quality assessment have been inconsistent when compared with pertinent references. In this paper, a criterion for supporting assembly selection based on mapping DNA microarray hybridized probes to assembly sets is proposed. Mouse and fruit fly RNA-Seq datasets were assembled with standard de novo procedures. Quality assessment was estimated using quantitative metrics and the proposed criterion. The assembly that best mapped to the available reference transcriptomes of these model species provided the highest quality assembly. The hybridized probes identified the best assemblies, whereas quantitative metrics remained inconsistent. For example, subtle probe mapping difference of 0.25 percent, but statistically significant (ANOVA, p < 0.05), enabled the assembly selection that led to identify 3,719 more contigs and led to 1,049 further mapped contigs to the mouse reference transcriptome. The microarray data availability for non-model species makes the proposed criterion suitable for quality assessment of multiple de novo assembly strategies.

Calls of Bryde's whale (Balaenoptera edeni) recorded in the Gulf of California (L).

A total of 109 recordings aiming to identify Bryde's whale calls were collected from the Gulf of California, Mexico, during field trips performed from January 2010 to June 2014. Vocalizations were recorded only when no calves were observed. Four types of calls were identified. Calls similar to the Be4 call type previously reported for the Eastern Tropical Pacific region and South of California were recorded. In addition, three calls, not reported in previous studies of the Bryde's whale, have also been identified. The identification of these calls, which were labeled Be10, Be11, and Be12, enables expansion of the known acoustic repertoire of this species, which is currently poorly documented. The identification of three previously unreported calls and the confidence given by careful visual confirmation of the whale species and number of individuals contribute to make this study a significant contribution toward the acoustic monitoring of Bryde's whale.